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First Step Towards an Artificial Human Genome Now Underway

First Step Towards an Artificial Human Genome Now Underway

Yahoo19 hours ago
As if sequencing a full human genome wasn't tricky enough, scientists are now attempting to reconstruct our species' genetic material from the ground up.
It's an ambitious and controversial project called the Synthetic Human Genome (SynHG) project, and work has already begun on a proof-of-concept.
The goal of this crucial first step is to use the human genome blueprint to write the genetic code for a single, enormously long strand of DNA in just one of our chromosomes – making up approximately 2 percent of our total genome.
The entire DNA content will be digitally designed before it is then built in the lab.
According to proponents, this project could kickstart a genetic revolution, profoundly changing our understanding of human DNA and possibly enabling designer cell-based therapies and virus-resistant tissue transplantation.
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Emboldened by these futuristic possibilities, the Wellcome Trust – one of the world's largest scientific research charities – announced this week that it was funding the SynHG initiative with £10 million (approximately US$13.7 million).
Researchers behind the project, who hail from the Universities of Oxford, Kent, Manchester, Cambridge, and Imperial College London, told the BBC that "the sky is the limit". They aim to build a fully synthetic human chromosome in the next five to 10 years.
"The ability to synthesize large genomes, including genomes for human cells, may transform our understanding of genome biology and profoundly alter the horizons of biotechnology and medicine," says project leader and molecular biologist Jason Chin from the Ellison Institute of Technology and Oxford.
"With SynHG we are building the tools to make large genome synthesis a reality."
Some independent scientists, however, are dubious that the SynHG project can get that far, even with cutting-edge generative AI and advanced robotic assembly technologies.
Award-winning geneticist Robin Lovell-Badge from the Francis Crick Institute, who is not involved in the SynHG project, says that he is "very enthusiastic" about the initiative, as "you can only truly understand something if you can build it from scratch."
But despite all the knowledge we have gained since fully sequencing and reading the human genome in 2003, he says there is still a lot of work to be done before we can actually build a complete one.
Today, the only human-made genomes fully written from scratch are for single-celled organisms that have, at most, 16 chromosomes made from roughly 12 million base pairs. That accomplishment took roughly a decade of hard work.
Humans, by comparison, typically possess more than 30 trillion cells with 46 chromosomes and 3 billion base pairs. Who knows how long it will take scientists to untangle that level of complexity?
"As for synthetic human chromosomes, although the current project is very unlikely to get that far, it may eventually be possible to make synthetic cells that can be grown in the lab with high efficiency," says Lovell-Badge.
"However, there is no suggestion to make synthetic humans. We have no idea how to do this, and it is likely to be very unsafe."
While the details are hazy, the SynHG team claims to be working with academic, civil society, industry, and policy experts to examine the ethical, legal, and social implications of their research.
Projects like these are bound to inspire social and ethical debates on the possibilities and consequences of complex health and reproductive issues, from the right to make 'designer' babies to the definition of eugenics.
"We must recognize that this sort of work is not without controversy, and that is vital for researchers and the public to be in communication with one another," says Sarah Norcross, director of the Progress Educational Trust (PET), which is a charity for people affected by genetic conditions.
"The public must have a clear understanding of what this research entails, while researchers and funders must have a thoroughgoing understanding of where the public wants to go with this science."
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First complete ancient Egyptian DNA genome reveals his occupation
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First complete ancient Egyptian DNA genome reveals his occupation

In 1985, geneticists achieved a major archeological breakthrough after they successfully extracted partial DNA from ancient Egyptian skeletal remains. Almost exactly four decades later, researchers have sequenced the first whole genome from an individual who lived amid the civilization's earliest eras. The findings are detailed in a study published July 2 in the journal Nature. Egyptologists have spent centuries analyzing mountains of archeological materials spanning thousands of years' worth of history. But while experts now know a fair amount about ancient Egyptian life, they still understand very little about the population's genetic makeup. Researchers have genomically analyzed three specimens to date, but in each case, poor DNA preservation resulted in only partial sequences. A tooth stored in museum archives for over a century has changed that, however. Archeologists initially excavated it (and its owner) around 1902 at Nuwayrat, a village roughly 165 miles south of Cairo. Experts couldn't immediately glean much from the body, but radiocarbon dating revealed the individual lived between 2855 and 2570 BCE. This placed him between the Early Dynastic and Old Kingdom periods, a time when rulers oversaw the first pyramid construction projects, but before standardized mummification practices. This lack of mummification likely contributed to the DNA's long-lasting integrity, allowing researchers from the Francis Crick Institute and Liverpool John Moores University in the United Kingdom to finally extract its full genomic information. Their genetic analysis linked 80 percent of his DNA to North Africa, while the remaining 20 percent traces to the Mesopotamian Fertile Crescent near present-day Iraq. It's still unclear if most Egyptians at that time shared a similar ancestry. However, the tooth's dietary chemical signatures indicate the man grew up in Egypt as opposed to migrating there. Further examinations of the overall skeleton also point to a life of hard labor. 'The markings on the skeleton are clues to the individual's life andlifestyle—his seat bones are expanded in size, his arms showed evidence of extensive movement back and forth, and there's substantial arthritis in just the right foot,' explained Liverpool John Moores University archeologist and study second author Joel Irish. Irish and colleagues believe the man likely worked as a potter, with the foot arthritis corresponding to the use of a pottery technology arrived in Egypt around the same time that he was alive. 'That said, his higher-class burial is not expected for a potter, who would not normally receive such treatment,' added Irish. 'Perhaps he was exceptionally skilled or successful [enough] to advance his social status.' Moving forward, the team hopes that their achievement is only the first of many similar DNA sequencing projects. 'Piecing together all the clues from this individual's DNA, bones and teeth have allowed us to build a comprehensive picture,' said study first author Adeline Morez Jacobs. 'We hope that future DNA samples from ancient Egypt can expand on when precisely this movement from West Asia started.'

Ancient Egyptian man's genome reveals his society's cross-cultural ties
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By Will Dunham (Reuters) -DNA obtained from the remains of a man who lived in ancient Egypt around the time the first pyramids were built is providing evidence of the ties between two great cultures of the period, with a fifth of his genetic ancestry traced to Mesopotamia. Although based on a single genome, the findings offer unique insight into the genetic history of ancient Egyptians - a difficult task considering that Egypt's hot climate is not conducive to DNA preservation. The researchers extracted DNA from the roots of two teeth, part of the man's skeletal remains that had been interred for millennia inside a large sealed ceramic vessel within a rock-cut tomb. They then managed to sequence his whole genome, a first for any person who lived in ancient Egypt. The man lived roughly 4,500-4,800 years ago, the researchers said, around the beginning of a period of prosperity and stability called the Old Kingdom, known for the construction of immense pyramids as monumental pharaonic tombs. The ceramic vessel was excavated in 1902 at a site called Nuwayrat near the village of Beni Hassan, approximately 170 miles (270 km) south of Cairo. The researchers said the man was about 60 years old when he died, and that aspects of his skeletal remains hinted at the possibility that he had worked as a potter. The DNA showed that the man descended mostly from local populations, with about 80% of his ancestry traced to Egypt or adjacent parts of North Africa. But about 20% of his ancestry was traced to a region of the ancient Near East called the Fertile Crescent that included Mesopotamia. "This suggests substantial genetic connections between ancient Egypt and the eastern Fertile Crescent," said population geneticist Adeline Morez Jacobs of Liverpool John Moores University in England and the Francis Crick Institute in London, lead author of the study published on Wednesday in the journal Nature. The findings build on the archaeological evidence of trade and cultural exchanges between ancient Egypt and Mesopotamia, a region spanning modern-day Iraq and parts of Iran and Syria. During the third millennium BC, Egypt and Mesopotamia were at the vanguard of human civilization, with achievements in writing, architecture, art, religion and technology. Egypt showed cultural connections with Mesopotamia, based on some shared artistic motifs, architecture and imports like lapis lazuli, the blue semiprecious stone, the researchers said. The pottery wheel from Mesopotamia first appeared in Egypt at about the time the man lived, a period when the earliest pyramids began to spring up near modern-day Cairo, starting with the Step Pyramid of the pharaoh Djoser at Saqqara and later the Great Pyramid of the pharaoh Khufu at Giza. About 90% of the man's skeleton was preserved. He stood about 5-foot-3 (1.59 meters) tall, with a slender build. He also had conditions consistent with older age such as osteoporosis and osteoarthritis, as well as a large unhealed abscess from tooth infection. "Ancient DNA recovery from Egyptian remains has been exceptionally challenging due to Egypt's hot climate that accelerates DNA degradation, with high temperatures breaking down genetic material over time compared to cooler, more stable environments," Francis Crick Institute population geneticist and study co-author Pontus Skoglund said. "In this case, the individual's burial in a ceramic pot vessel within a rock-cut tomb likely contributed to the unusual DNA preservation for the region," Skoglund added. The fact that his burial occurred before mummification became standard practice in Egypt may have helped avoid DNA degradation because his remains were spared elaborate preservation techniques. Scientists have struggled to recover ancient Egyptian genomes, according to paleogeneticist and study co-author Linus Girdland Flink of the University of Aberdeen in Scotland. One previous effort yielded partial genome sequencing of three individuals who lived some 1,500 years after the Nuwayrat man. Given the track record, the researchers were surprised with their success in sequencing the man's genome. "Yeah, it was a long shot," Skoglund said. The man may have worked as a potter or in a trade with similar movements because his bones had muscle markings from sitting for long periods with outstretched limbs. "All indicators are consistent with movements and positions of a potter, as indicated in ancient Egyptian imagery," said bioarcheologist and study co-author Joel Irish. "He would have been of high status to have been buried in a rock-cut tomb. This conflicts with his hard physical life and conjecture that he was a potter, which would ordinarily have been working class. Perhaps he was an excellent potter."

Scientists just sequenced the oldest and most complete ancient Egyptian human genome ever
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When you buy through links on our articles, Future and its syndication partners may earn a commission. Scientists have sequenced the oldest and most complete genome from ancient Egypt — and the DNA reveals that a man who lived 5,000 years ago had roots in both Mesopotamia and North Africa, a new study finds. The man — who lived during the Old Kingdom in the third millennium B.C., just a few centuries after Upper and Lower Egypt unified into one empire — provides researchers with a rare glimpse into the genetic roots of ancient Egyptians. The individual's body was first recovered from a tomb in Nuwayrat, in Upper Egypt, in 1902 and now reveals new information about the genetic makeup of early Egyptians. Prior to this analysis, only three ancient Egyptian genomes had been sequenced, and all were partial. "I was very surprised" by the success of the sequencing, study co-author Pontus Skoglund, who studies ancient DNA at The Francis Crick Institute in the U.K., said at a news conference Tuesday (July 1), before the paper's publication. "It was a long shot that it would work, as it is with many of these individuals." Radiocarbon dating found that the man had lived around 2855 to 2570 B.C., during the Old Kingdom, a period known for its stability, innovation, and the construction of the step pyramid and the Great Pyramid of Giza, according to a statement. He was buried in a ceramic pot within a rock-cut tomb and was preserved well enough that two DNA extracts from the roots of his teeth could be sequenced. Researchers compared his genome against a library of thousands of known DNA samples. Eventually, they found that most of the man's genome could be traced to North African Neolithic ancestry, according to the study, which was published in the journal Nature Wednesday (July 2). About 20% of his DNA was linked to the eastern Fertile Crescent, including ancient Mesopotamia and its neighboring regions. Image 1 of 3 The facial reconstruction of the Egyptian man whose genome can be traced to ancient Mesopotamia. Image 2 of 3 Remains were buried in a pottery coffin in Nuwayrat, in Upper Egypt, in 1902. Image 3 of 3 Scientists analyzed the genome of an ancient individual found in Nuwayrat (red dot), about 165 miles (265 kilometers) south of Cairo. It's rare to find preserved human DNA from ancient Egypt, but another individual's DNA from Abusir el-Meleq (purple diamond) from the Third Intermediate Period (circa 1070 to 713 B.C.) was previously sequenced. This body was uniquely well preserved compared with those of other ancient Egyptians, which often degrade due to the high temperatures of the region. "The pot burial, in combination with the rock-cut tomb into which the pot burial was placed, provided a stable environment" that likely helped preserve the DNA, study co-author Linus Girdland-Flink, an archaeologist at the University of Aberdeen in the U.K., explained at the news conference. Related: Why are so many ancient Egyptians buried at the Saqqara necropolis? The man's remains provide clues about his life in ancient Egypt nearly 5,000 years ago. He lived to between 44 and 64 years old, which would have been considered an advanced age for his time. The high degree of osteoporosis and arthritis suggests he was on the higher end of that age bracket, study co-author Joel Irish, a bioarchaeologist at Liverpool John Moores University in the U.K., said at the conference. The man's ceramic-pot burial and rock tomb point to an elevated social status, which contrasts with the many signs of hard physical labor on his remains. Irish found evidence that the man had held his hands out and sat for extended periods of time — a clue that he may have been a potter. Because most of the man's genetic ancestry is linked to North Africa, it's likely that "at least part of the Egyptian population mainly emerged from local population," study first author Adeline Morez Jacobs, a biological anthropologist at the University of Padua in Italy, said at the conference. RELATED STORIES —Huge cemetery with at least 250 rock-cut tombs discovered in Egypt —3,300-year-old ancient Egyptian tombs and chapel with 'amazing' decorations unearthed at Saqqara —Long-lost branch of the Nile was 'indispensable for building the pyramids,' research shows More notably, the link to Mesopotamia "was quite interesting because we actually know from archaeology that the Egyptian and the eastern Fertile Crescent cultures influenced each other for millennia," she said. It was already known that the groups shared goods, domesticated plants and animals, writing systems and farming practices, but this genome is evidence that the populations intermixed more deeply. However, Morez Jacobs cautioned that this man's DNA may not represent the broader Egyptian population of his time. "We need to remember, this is a single individual," she said. "We didn't capture the full diversity of the population."

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